Content-type: text/html Manpage of imspec

imspec

Section: User Commands (1)
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NAME

imspec - Plots spectra from image data  

PERSON RESPONSIBLE

bpw  

CATEGORIES

map analysis  

DESCRIPTION

Imspec plots spectra. The flux, primary-beam-corrected-flux, mean or sum of an area can be plotted. Data can be averaged/summed in ra-dec, ra-vel or dec-vel (etc) planes, to obtain profiles along the vel, dec or ra axes, respectively. See the description of the keyword axes. To get fluxes the sum of the beam in an area of the same size as the input region is calculated, using the beam keyword. The data can be converted to Kelvin, by using 'options=tb' and the beam keyword. Output can be written to the terminal, a log file, or a plot. The options keyword gives control over the plot. To write the spectrum to an ASCII file use options=list,noheader and log=logfile. The plotheader can be suppressed by using options=noheader. An alternative title can be put on the plot by options=title. A useful combination is 'options=noh,ti,title', to get only the string 'title', instead of the full header.  

PARAMETERS

in
This is the standard name for an input dataset -- usually an image, though sometimes either an image or visibility dataset or some foreign dataset format. Some tasks support multiple input datasets at a time (with wildcard supported) whereas others can handle only a single one at a time. There is generally no default input name.
region
This selects a subregion of an image. Multiple subregions can be selected, which are "ored" together. The following subcommands are recognized (each of which can be abbreviated to uniqueness).

  images(z1,z2)
Select image planes z1 to z2 inclusive. z2 defaults to z1.

  quarter(z1,z2)
Select the inner quarter of the image planes z1 to z2 inclusive. If both z1 and z2 are missing, then all planes are selected. If only z2 is omitted, z2 defaults to z1.

  boxes(xmin,ymin,xmax,ymax)(z1,z2)
Select the pixels within a box with corners xmin,ymin,xmax,ymax. z1 and z2 are the same as in the "image" subcommand. If z1 and z2 are omitted, all planes are selected.

  polygon(x0,y0,x1,y1,x2,y2,...)(z1,z2)
Select the pixels within the polygon defined by the list of vertices. z1 and z2 are the same as in the "image" subcommand. If z1 and z2 are missing, all planes are selected. If only z2 is omitted, it defaults to z1.

  mask(file)
Select pixels according to the mask given in the file.

The units of the numbers given in the above commands are, in general, absolute pixels. But this can be changed (and rechanged) by using one of the following subcommands.

  abspixel
Coordinates are interpreted as absolute pixel values, the default.
  relpixel
Coordinates are relative to the reference pixel of the map.
  relcenter
Coordinates are relative to the central pixel of the map, (defined as (naxis1/2+1,naxis2/2+1)).
  arcsec
Coordinates are in arcseconds, relative to the reference pixel.
  kms
Coordinates in the third dimension are in km/s. For the moment imspec only recognizes rectangular boxes. It will use the mask associated with the input image.
plot
This selects what will be plotted as function of e.g. velocity. To convert data to fluxes the input of the beam keyword is used. Minimal matching is applied. The default is 'flux'.

 'mean'        Plot the mean
 'sum'         Plot the sum
 'flux'        Plot the flux
 'pbcflux'     Plot the primary-beam-corrected flux
               (not yet implemented)
options
The options control the characteristics of the plot. Possible options are (minimal matching is done):

 'tb'          Convert the units of mean or sum to brightness
               temperature, using the input for the beam keyword

 'hanning,#'   Hanning smooth the data first over # pixels (must be
               an odd number)
 'boxcar,#'    Boxcar smooth the data first over # pixels
 'deriv,#'     Take the derivative after smoothing. If #=1 a one-sided
               derivative is taken, for #=2 a two-sided. Useful for
               Zeeman work.

 'noheader'    Do not write the header information, just the numbers,
               producing an ASCII file for a plotting program
 'list'        Write the spectrum to the screen/logfile
 'eformat'     Always use format 'e' instead of 'g' to write results
 'guaranteespaces' Make sure there is always a space between columns
               (at the cost of precision)

 'xmin,#'      Give lower x-value on axis
 'xmax,#'      Give upper x-value on axis
 'ymin,#'      Give lower y-value on axis
 'ymax,#'      Give upper y-value on axis
               (for these four options the default is autoscaling)
 'title,#1,#2,#3' Put the string #1 at x-position #2 and y-position #3,
               with positions measured in units of the coordinates
               on the axes. If 'title' is the last option, the title
               is put in the upper left hand corner.
 'style,#'     This selects the plot style.
               #=connect means connect the datapoints
               #=step means make one-bin wide connected horizontal
               line segments
               #=histo means bins are drawn as a horizontal line
               surrounded by two vertical lines
cutoff
All datavalues below the cutoff are not used for the calculation of statistics. Give one real value. This may be followed by the string Default is no cutoff.
beam
If plot=flux is used, imspec calculates the sum divided by the sum of the beam to get the flux in the selected area, if the units of the input data are 'per beam'. If the name of a dataset is given, it assumes this is a beampattern and sums the data in a region of the same size as the input region. Else, it assumes that 'beam' gives the major and minor axes of the beam in arcsec and it calculates the sum of a gaussian beam of that size. If 'beam' is omitted, but 'flux' was selected, the beam is found from the header (items bmaj and bmin). If neither is present, the sum is assumed to be 1.
axes
This keyword gives the axis or axes along which data are averaged to obtain one datapoint on the profile. Combined with the region keyword, this can be used to get a profile as function of any coordinate. The specifications are admittedly complex, because data averaging is allowed.

- Example 1: to get a profile along the velocity axis (a spectrum) use

  axes=ra,dec, region=relpix,box(-31,-31,32,32)(10,40)
to average in ra from -31 to 32, in dec from -31 to 32 and plot the average as function of velocity from channel 10 to 40. - Example 2: to get a profile along the ra axis (at a given declination) use
  axes=dec,vel, region=relpix,box(-31,0,32,0)(10)
to plot a profile along ra from ra=-31 to ra=32, at dec 0 and in plane 10. - Example 3: to get a set of profiles along the ra axis (at a number of declinations) use
  axes=vel, region=relpix,box(-31,-31,32,32)(10)
to plot a profile along ra, for plane 10, one for each declination between -31 and 32. - Example 4: to get a profile along the declination axis (at a given ra) use
  axes=ra,vel, region=relpix,box(-10,-31,10,32)(10)
to plot a profile along declination, with ra averaged from ra=-10 to ra=10, and in plane 10.

The default is to make a spectrum in the velocity direction (example 1). Possible values for axes are: 'rascension', 'declination', case and capitalized versions and the string 'R.A.' are also recognized. Minimal matching is applied. One or two axes may be given.

device
This keyword is used to specify the plotting device. It uses the normal PGPLOT format of

  file/type

 or

  device/type

Usually there exists a default file name or device name. The part after the slash gives the plotter type. Examples of the type are:

  xs    X-windows output. This window is resizeable and
        persistent. Prepending a number allows you to use multiple
        windows, e.g. 1/xs, 2/xs etc.
  xd    X-windows output. A transient window that disappears
        when your task exists.
  ps    Postscript (landscape mode).
  vps   Postscript (portrait mode).
  cps   Color postscript (landscape mode).
  gif   gif files. Only supported with g77, not gfortran.
  vcps  Color postscript (portrait mode).
  tek   Tektronix 4010 or equivalent.
  xterm Xterm window (better for simple plots over slow X links).

A `?' as device name generates a complete list of the recognized types (which will most likely vary from system to system).

Files created for hardcopy devices must be spooled to the printer separately. The command needed for this is site and device specific.

log
If specified, output is written to the file given by log= instead of to the terminal.


 

Index

NAME
PERSON RESPONSIBLE
CATEGORIES
DESCRIPTION
PARAMETERS

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Time: 18:35:38 GMT, July 05, 2011